maximum bury fraction for bSi

Running mean time scale for bury coefficients

Threshold depth for CaCO3 burial when opt = 'fixed_depth'

omega calcite threshold for CaCO3 burial when opt = 'omega_calc'

Option of threshold of CaCO3 burial

Option for which biological fractionation calculation to use

Control whether carbon isotope variables are written full depth

Control which portions of the carbon isotope code are executed (useful for debugging)

Control whether CISO tracer module is active

Fe:kFe ratio threshold in uptake ratio computations

Si:kSi ratio threshold in uptake ratio computations

initial Si/C ratio for growth

max Si/C ratio for growth

min Si/C ratio for growth

MARBL will abort if abs(Jint_Ctot) exceeds this threshold

Control if bury coefficients are adjusted (rather than constant)

Control if NHx emissions are computed

Control whether base ecosystem variables are written full depth

Control which portions of code are executed (useful for debugging)

Control which portions of code are executed (useful for debugging)

Apply o2_consumption_scalef to o2 consumption (and request it as a forcing)

Apply p_remin_scalef to particulate remin (and request it as a forcing)

Control which portions of code are executed (useful for debugging)

Control if PtoC ratios in autotrophs vary

o2_scalefactor is applied to diss length scales for O2 less than this

o2_scalefactor is constant for O2 less than this

o2_scalefactor constant for O2 less than o2_sf_o2_range_lo

Base CaCO3 dissolution length scale

CaCO3 gamma (fraction of production -> hard subclass)

Fraction of sp production as CaCO3 production

Fraction of Fe flux that is bioavailable

Desorption rate for scavenged Fe from particles

Scavenging base rate for Fe

Scavenging base rate for bound iron

hPOC to CaCO3 ratio

hPOC to dust ratio

hPOC to SiO2 ratio

Initial scale factor for burial of bSi

Initial scale factor for burial of POC, PON

Initial scale factor for burial of POP

Nitrification inverse time constant

Fraction of loss to DOC that routed directly to DIC

Fe-binding ligand bacterial degradation base rate coefficient

Scavenging base rate for bound ligand

PAR limit for nitrification

Minimum O2 needed for production & consumption

Width of min O2 range

Base POC dissolution length scale

Prescribed scalelen values

Depths of prescribed scalelen values

Global scaling factor for sed_denitrif

Base SiO2 dissolution length scale

SiO2 gamma (fraction of production -> hard subclass)

reference depth for particulate flux diagnostics

Define how PFTs are initialized

maximum bury fraction for POM

Scale factor for burial of PON

Source of initial burial coefficient

Number of autotroph classes

Number of grazer prey classes

Number of zooplankton classes

Maximum agg rate

Minimum agg rate

Initial slope of P_I curve (GD98)

Flag set to true if autotroph explicitly handles calcification

Initial Fe/C ratio for growth

Minimum Fe/C ratio for growth

Flag set to true if autotroph implicitly handles calcification

DOP uptake half-sat constant

Fe uptake half-sat constant

NH4 uptake half-sat constant

NO3 uptake half-sat constant

PO4 uptake half-sat constant

SiO3 uptake half-sat constant

Long name of the autotroph

Routing of loss term

concentration where losses go to zero

concentration where losses go to zero

Quadratic mortality rate

Linear mortality rate

Flag set to true if autotroph fixes nitrogen

Maximum C-spec growth rate at Tref

P/C ratio when using fixed P/C ratios

Flag set to true if autotroph is a silicifier

Short name of the autotroph

Temperature where concentration threshold and photosynthesis rate drops

Maximum thetaN (Chl / N)

Indices of autotrophs being grazed

Number of autotrophs being grazed

Fraction of zoo losses to detrital

Routing of grazed term, remainder goes to dic

Routing of grazed term, remainder goes to dic

Routing of grazed term, remainder goes to dic

Functional form of grazing parameterization

Long name of the grazing relationship

Short name of the grazing relationship

Grazing coefficient

Max zoo growth rate at tref

Indices of zooplankton being grazed

Number of zooplankton being grazed

Long name of the zooplankton

Zoo concentration where losses go to zero

Short name of the zooplankton

Quadratic mortality rate

Linear mortality rate

Tracer names for tracers that are restored